NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209447_10000161

Scaffold Ga0209447_10000161


Overview

Basic Information
Taxon OID3300027701 Open in IMG/M
Scaffold IDGa0209447_10000161 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17322
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000239Metagenome / Metatranscriptome1488Y
F038769Metagenome / Metatranscriptome165Y
F059154Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209447_1000016116F059154GAGGVTQAIATQQYSGVYCRACGEPISLPVRAEKALATRPAETSDPASEALPVVFNLRCKACEKENFYGAKDVANIHGSPRQARPRARATAPLLRPDLKLARTANA
Ga0209447_1000016119F038769AGGCGGMIGFLDDQRRAQRLPIYLPVQVYGKLDGVPFSENTETINVSACGGLVPISAGVVRAQRLILTNLQTDQDLTCRVARLIRTERGQVLAGLEFLQSAPGFWRSSPYATDMIQPMPAKYPRGL
Ga0209447_100001617F000239GGAGGMHDSKQRVVRFLEKEIKTYTALSLFLSKKGVREHLRAGANKALISPSFYKERMKEAKKLVYDLRKSD
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