NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000011

Scaffold Ga0209581_1000011


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000011 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820534
Total Scaffold Genes738 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)619 (83.88%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000438Metagenome / Metatranscriptome1143Y
F000626Metagenome / Metatranscriptome976Y
F002531Metagenome / Metatranscriptome551Y
F022248Metagenome / Metatranscriptome215Y
F025326Metagenome / Metatranscriptome202Y
F026812Metagenome / Metatranscriptome196Y
F052066Metagenome / Metatranscriptome143Y
F055023Metagenome139Y
F089292Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000011207F000626AGGAGMPIVKKAPGIITREVKLEEPVNELLEDYARFIESNADHVVNAVLKKVLWRDQDYRKWRETRRTAQSGTERTQPTEARARA
Ga0209581_1000011372F002531AGGAMASAIATEGTLRIHRSIAGTAAPFRVTYQPYQDGDEPAPAAERSFYHLQDVRAFLNVLGIGADYVRDALRELTAGRSAFLTNIALTEKAVKNAGFGALVAAKG
Ga0209581_1000011421F055023AGGAGMKTEDELDAEIAKLFDEVTTTKVDMVNGKPRISDQATIDQMEREEAARRMEEACGLFLTREREFQRIAQHPRVVTDPQMNALWWDRLEAVYVAEKAVQRLFMGPQSTVADNKLYTRFRKLLLDGSKLRADA
Ga0209581_1000011422F089292AGGAGMLKWLLKFVLQRLLILFVLVVASAILPVASFWLVRDPLGGQLFFWLSPWTCAVWALLISALLGSRFWLGREYVLAWRAARGGYVMSSVKSTALMFLSLFASYFFEFAVILLLPRSLTSLRLLPIAAYAPVGIAALWSVSGGIWSRTDRIVEGRRLADSMNEEPE
Ga0209581_1000011532F022248AGGAGMETMLGFAGVTVVTTLALFAALALESLLLHGMLRLMQPATANRRPVRLQVAHGTRLVARAFGSRS
Ga0209581_1000011536F026812GGAGGLRGFAAALAFCSLAVGAGVARADGPSCADLRAQKEKVYGFHVAQLTETQIEAKTKEIDDYWKQVQSSGNGAVGCLKDMLGSEKTDHIFQFDAASFLFQLDKSPDSLNLIKDALVQTDFQETDPANYLSLALELGQRGVEIQSLAAKLLLYPNAVVHISEHSLDLDSDTAALFLYGSMDPQKASEALIAKLQAEQPFVRAAAAHLLAEQMTEPAFRTLSTWKGTAEIQEDYRRNDIQAVMKYDPPEASGLASPKWTREQVLQIIAALPHTRKEFDQVMSTRGAEFDREMREKKATQDELAKAVAEAEPIYGIADHTAFQNAAVATLTADDFETIRQARRHSLHDVSDESLSEYLAYTQIMIRMLNHLDLYKDYRTH
Ga0209581_1000011544F025326GGAGGMNLTMQQKRGLFWALGIVTGATLTSLAWHQINVALSHCIFILK
Ga0209581_1000011573F000438GGGGGMDKFEDIGKRLDEELTRLRKYVEEEVAPATEKRTAQVLREASEKLSEAARKLEARVAARAAQESSQPKP
Ga0209581_100001189F052066GAGGMDRAEQVRQILFARGLTLYRVSQQSAQTFGRSSRFYVPHNLYYDVGDPSLIPTIHQMLALSHITNYRLSDWLAVFGFDLDSISRLRMLIPRQQTTLLDSTVYDTHSWIPWFAERPQAGPVPPIAPLGEFLETAAPRRAADLLPLSKTRFLYGKVGENDAHAFPHLAPGSIVRVDARSSEELLSSTKTNVDRRLFLVEQSFGFTCSQLVVLEKDRVILDSPQRPCAQVELRLGKEARILGIVDAEIRPLTHHHAVWVPPRLAIAPKPQLLPSPSMQANLLDLLRSFRTRVGLSFREASSSSRWIANMLSDELFFTAASTLSDYETLSLPPRHIQKIITLCVLYCIDFNQFLRASGLPLDQAGREAIPDELIPRQVPDRNQGLHVASEKERLQEHGGFLGSLMKNWEEVPLFLRHSLNELTSLKNFSLSDVFWVGGDERPIHPLLINATFVAVNRRVKKPPESTTNAVCKQPLYLILKRDGSYLCGRCTLHEGKLTVNAHPGGPLGTQHFRNGTDAEVVGQVTTILRRLS

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