NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000116

Scaffold Ga0209581_1000116


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000116 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)257580
Total Scaffold Genes219 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (79.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F050849Metagenome144Y
F092767Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000116165F050849AGGMQRVVELVEREAGHVLVSLVLIILGALLWLLKVPKGEDLIPFALGVLGRSMVGKSNESSR
Ga0209581_1000116170F007212N/AMSDWATIGAGVNAAMMKAFGEPVVYQPVQGGFPVGDPVTITAIRHSRERAESGAVASAEEISVNPTDLPDFPQPGDWVTAWGMQFVVGPVRQPDAYGLAQLSLIARQSADDQP
Ga0209581_1000116171F002448N/AMINPKTLLAEWMDALRSLPKLVEALGGNPNHIQFYSENAIVFGKPTQNNIRLAILSMPPGSILVAWQGTAPGRLGNMLVFVHEFSLYLRAPEEAEVGYEDLFNWIVNDTPPGSTIPMLHIQIDPNCEPMDFYLPSARRNTIVISADGATFEYFECPVRLIESYNS
Ga0209581_1000116179F000451AGGMARFQTVVRRARFVYSPYTAEEMQGFAQVLADAIRARIQSGQNIYDQPAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAVIGFLDEAMPGRRQTASQIAYYNNLRERQWGVSPRDRAAVIAAILAGRRVVSVKAA
Ga0209581_1000116182F000335GGAMPGNLQPAAPNGVMPFSLCTAFTELREYAQLQDQYRDGTIQRSQLAQTSRRMFRLSKRLSASALATLYNFWVSQNGGLTPFAFYNPFDVLADQQIGSNYDPTGNNTQGRVTVVFRGNWAQVTELARSNVQALELVEVA
Ga0209581_10001163F092767N/AMRGADCRQTVGMARRRTAEEIQKIVEELQASGLSHRDFCQQTGIKLSTLGRYARRARGSEQPQQLVRVKLDVPQEPGAGFVLMLGNGRRIASGWGFSDTALARLIRVAESA
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