NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000176

Scaffold Ga0209581_1000176


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000176 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)196971
Total Scaffold Genes164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (74.39%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012384Metagenome / Metatranscriptome281Y
F012500Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000176109F012384AGGALPETPSKPPRRWTVISAGLLILAIALIVLFTGNAAFHSPTSAVVLAAIGLVAVLLQLRLRPDGAQKVRAPQWLNFVGIVCASCALFADFLRLGPNLYQVAALGAVGCFGVSSLIMLDGIRRSRVSAK
Ga0209581_100017686F012500GAGMENIPLRRTTILFAALLAGMLSGSAFGQQMDFALGFSTLHSAAVSTSQATQIFPPASLTGGLYPSISGDFSLRKNFAVGGEISWRGGQGNYDLSQPYRPIFWDFDGLYIPKLGPHAQAEFSAGIGAESTRFYTNYLNCSFVSCTNYQTSTHFMGQFGAGLKLYAKGGLFVRPEMHLYLVNNNLEYTSPYVVRYGASIGYTFGH
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