NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1001277

Scaffold Ga0209581_1001277


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1001277 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31000
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007854Metagenome / Metatranscriptome343Y
F012361Metagenome / Metatranscriptome281Y
F013999Metagenome / Metatranscriptome266Y
F036795Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100127712F013999AGGAGGMFGTIRRKWRIESRRFVRAVGTSAATLLLASPAFAQIGGDQVTSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0209581_100127722F036795GGAGGMKFVWIGALLLIFASVANLISNRQSGRLIEESWKPASHVLGESKLLELQRAVPAYTANIFARFPEPFREKLAGKTRQPLELMVLRFLLLCGIIPAFLFAAIAGLLEGFWARANQRGLVKIHSPMRFGLAMMGLGFMPVLALLWITAPIAVPPTLLVFTVGVVVVISTRNLVVHAPTRF
Ga0209581_100127726F007854GGAGMNTLIANQYGRVQGEAGGCGLTLCVTAQTPRRESVELQTHVESVEQQLHLLAILRAVERRIEQFQLRDGKAGESAGQQSPFEETICGEEDLFRSNGSPSKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASTHGLRFIVQTPLWRSEFIISKANDLATLAVFTRRAINQEKTIPIKFGGEVNQLTLRRRNDGQVLAEFEHDGAMERIALSTLQLYELEILAQYALHRAFEPSSFAAGNPLPPETATAA
Ga0209581_100127732F012361GGAGGMPNDGNSFTHYVIANEAILGEACIIEKCNAWISLAFIKLGIGRPDAVADRAFVENRALVPKTAN
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