NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1002630

Scaffold Ga0209581_1002630


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1002630 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16791
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100263010F002448GGAMISPKTLLAEWVTALQSLPHLVEAVGGNAHHIQFYSENAVVFGRPTQNNIRLAILSMPPGSILIAWQGSGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDTPTGGTLRMLHTQIDPNCEPMDFYLPSARRNTIVISADGATFEYFEVPVRLIESYNP
Ga0209581_100263011F007212N/AMPADWPSIGAAVNAALQDAFGEPVVYQQVQGCLPVGNPVTITAIRHVRERAESGTAASAEEISVDPAELPNFPQPGDWVTAWGIQFAVSTVRQADPYGMAQLTLIARKSPDDQS
Ga0209581_10026302F000335GAGMPGNLQPAAPNGVMPQSLCTAFTELRDFVQLQNQFHDGTIQRSQLAQTSRRTYRLSKRLSPSQLSALYNFWVTQNGDLTPFAYYDPFDILPGQQIGSNFDPTGNNIQGRVTVAFRNAVWAQSTGLARTDVPQIELVEVA
Ga0209581_10026304F000451N/AMPRFQTVVRRARFVYSPYAAYEMQGFAQVLADTIRARIQSGQNIYDQPAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTVNENRAAIGFLDEAMPGRKQTASQIAFYNNQREREWGVSPRDREALLAVMLNYRPLVVAAGGAELAGYRQYGAAVYFSALRPAA
Ga0209581_10026309F010139AGGAGMAEVVYLASPHGDEVKEVEATAEKLTPWLAAGWHQVPAPAPQKPATEVQEEK
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