NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1010089

Scaffold Ga0209581_1010089


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1010089 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6101
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022942Metagenome / Metatranscriptome212Y
F024632Metagenome / Metatranscriptome205Y
F076358Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_101008911F076358GGAGMSFLDSSSPRSVLWLFYSSAFLSAILFGAASYASDSYHRPLLVLALVMALAAAFFLVLFLRSRDERERQINYRALTFAFVGTLLFSLVVGMAQQLGLHPVPWLGLPAVMIALWSFGLILYSWRDQ
Ga0209581_10100897F022942AGGAGGMAGIEGIGSQFPKQLSERSPKLRIYESLFLLNEGIDRLVALLRDMGKFPFADKDSMQCAIVEIEEVRCDMNADFTEHLADSERFDEGHFWKQRRVFEKKWRDPDDVYIEVEHREEERKKLGLPSRVIGSILPHSALVQAEERWEAEQERKKKRPRKPRK
Ga0209581_10100898F024632AGGAMERRSKLREARLRGKYAEVHGKVVDFITHTIDDGTLYFTVRFTDQTSFCVRYACDMFAVGAELSDWQSGDFHIIREYMKPIPR
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Institute for Fundamental Biomedical Research
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