NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1027167

Scaffold Ga0209581_1027167


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1027167 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014286Metagenome / Metatranscriptome264Y
F020888Metagenome / Metatranscriptome221N

Sequences

Protein IDFamilyRBSSequence
Ga0209581_10271671F014286N/AMINLIFFAILGFVLFGSFVFLALQGGPKSLPESSALQAVANIISLEGTSFANARRLLDDTDYQVLCSNPDLRRLAERLRDDRKHLALAWISLLQADLITLWRFRRFLIHRGVSSSVSEELRTLQSLVFSLALLAVLRISIYTVGPFALPRLTRQAGQLVDSMSEGAAVVLGRIPAAGWADIERSWAKSAA
Ga0209581_10271673F020888N/AMLREKPISRYLQNVLDALPSAFAQLVFLSSLRDPYTGRYLHEGWASVSSPEEVNRALGETHRSVFEAVVNLSLMDLSRELRKHFNSLGQVEVRVANLWLETEPYYEMIPEGCSMLARRFFISQFRSALEVLIQAPGWTYLEEPAASPLPQPAPEPRPRWLN
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