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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027708 Open in IMG/M |
| Scaffold ID | Ga0209188_1000003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 345369 |
| Total Scaffold Genes | 420 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 279 (66.43%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001008 | Metagenome / Metatranscriptome | 807 | Y |
| F002977 | Metagenome / Metatranscriptome | 516 | Y |
| F011665 | Metagenome / Metatranscriptome | 288 | Y |
| F015338 | Metagenome / Metatranscriptome | 255 | Y |
| F018716 | Metagenome / Metatranscriptome | 233 | Y |
| F019762 | Metagenome / Metatranscriptome | 228 | Y |
| F020170 | Metagenome / Metatranscriptome | 225 | Y |
| F048089 | Metagenome / Metatranscriptome | 148 | Y |
| F071946 | Metagenome / Metatranscriptome | 121 | Y |
| F072324 | Metagenome / Metatranscriptome | 121 | Y |
| F076100 | Metagenome / Metatranscriptome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209188_1000003107 | F020170 | AGG | MSKHVEPSPEQNEESHERLMLAFREYFKANQNWQSRGSRRAGENMRYWLAQIRIIAKERRGHVQQYRMWLDKDKAAKKENQKAQSEDPDNTN |
| Ga0209188_1000003136 | F015338 | GGA | MAIKNGKPNPLNYFNLRRVDFACPHFKYSTIDKYTPTLVKSLDSWIRKNLNNRYYIGQDVSLDNTNTIVYVTRIGFESEKELSFFTIACPLLQTR |
| Ga0209188_1000003141 | F011665 | N/A | MSNQINLTPITQFAQVLRAAELTQSKEIKMPIQQARLLNLALLEIQDKLLQDYTALFLELKNSSETEVITVSMDGGGFKDK |
| Ga0209188_1000003152 | F002977 | N/A | MKYQTPAEGILKTNEWGDSKVYRVVCECTDSQHDHNVWVEADANEISVTIYATVKSNFWSKTRWYHIWSLLSKGYIDTETTLILRKQGALNYAETLKSAIQDVEDFRKR |
| Ga0209188_1000003153 | F076100 | GAG | MKYITNKFDNVRFPVEPGLLEWLRENYPASKYIIKEIK |
| Ga0209188_1000003155 | F018716 | N/A | MQDLTIKILWDNQSVVWWNECCASVLEVFGLPGHRFVYKPYEDYMTFTFKNQKDYNLCQILLSEHIRA |
| Ga0209188_1000003158 | F019762 | AGGAG | MKELHESVAVTAKEMTIKQSEGFRVRMEKHEVLSPKGLYSLDLIQENLKDGKVIDSQTYNFFMTKSELNTLAYALTL |
| Ga0209188_10000032 | F072324 | AGGAG | MLEVTQFANNSFHAQNSDVRNCEAIVFAESVRSGRTMLQVINYVLEEDDSDTNLLCACETLQETIVNAYKKQIISEYLDNLLYENNK |
| Ga0209188_1000003251 | F001008 | GAG | MSKAKHKPHQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDTNPDGYWLHPEDVGLNMQTIAALDLIIDHFVVTEDEK |
| Ga0209188_10000033 | F071946 | AGGAG | MYDIVKNPIPKTGLFATPESFEQLMEYCQRFSGQERIIAITVATMALNLAHNVVEKEILSKEIFAQ |
| Ga0209188_1000003304 | F048089 | AGG | MKPGKTFKLSKTTKRMIGLMKGSTAEQRNQYKNMMIDAQLCSEIVIKSAPKQRDSGARSTNAYTATDSTIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |