Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000427 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000427 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40807
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (83.08%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

40807

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (83.08%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F029042	Metagenome	189	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_10004271	F029042	N/A	MIDPITISAAFALAKSTIAGVQEAIQMGKDLQECSGDLIKFFEMRDTVAKAATEDKGKKPRSDMGQALDTVMQAKALRDAEKKLKEQLIYSGQGDVWEAIQAEYNLIIANRKREEREAETAAKNRREQLAEMVETIFYGLAGCIVGGLICWGTVE
Ga0209188_100042715	F005087	AGGA	MSLFIQSANALVSRIAQWVGAIPSSIGITATAVNVSTGVITTSASPQTALMVGDFIGNSLAGPYTLVLALTSTTITVDDPDGAWTGLTLPVTILKLPTQSALEIQMCIQNTELKMRTIELPALRTDPYDPISPSILTTNADGMAPIPGDMCFPVQFFQESAPSNQGAGYTALGPWIMYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGANVTIKAYYQRTFPFLFSPTADPLIPIVQNNAVLSSFPEGYMYGTLESYYDKNKNVEEAQKWAARFDDAYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK
Ga0209188_100042716	F000857	GGA	MTDDEVRVNEEYYSKGILESGIDGVFRQNDKLFNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEEVRQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQERKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTK
Ga0209188_100042720	F003521	AGGA	MYSIETKSLVLNIRNYFNRRTKAADAHKDADVNRKTLVIENGNCASRLMKNEDFALMFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAQKINTSPKE
Ga0209188_100042721	F004695	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEADNEQATQATEMVKYMVNSKNDSYAIIRDWAQDALLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEADQPNQQEEMDSAIKANTIYKAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKSQFPYIDIEKMSEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADKFSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFTALLGQLDPSVPELFGKVRRPFEDTLRVLGVKDVDAYLPTIEEAAKVMQAKAAQGPSPEQKEIQSKTDLNNAKVQESQTVSALNVKKAEDIDTDNMFEALAAKRGKLSAVEI
Ga0209188_100042723	F006264	AGAAG	VGVIEEPSIFRQKLSGQAEVCARKALEWLQKDLQGDRTLSPQDVFYLASAADLLLAMRDLYGKK
Ga0209188_100042725	F040590	GAGG	MSAYGKVISGGKAMTNGLTKGINKKLEAFSGSHKRAALLANSVRDTFNQNPLSDPHLNNINGSKFTKPKLPTKV
Ga0209188_100042728	F012670	AGGA	MKLPHPDDLIHGDIRPEGSHVSSEELKEKKRQYYQMKKAEKKALALSTGQQPPKEPRPNMGTTIPSNGRPKSIVNRVTEYGALFNKLNDERASKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQALRKV
Ga0209188_100042729	F001915	AGGAG	MEWTLAHPLHDVDDIVEMADSVFGQEADGILTRDRNVFRKNVTIASTVQLFDKGREFIAVCRNWDEIRLLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVRLINQMIDQHILWAHTWHIPVICSTSIRAEHNAFMRIHQKRGFQTNGSYAWIRTENAIKDLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000427

Overview

Ecosystem & Geography

Associated Families

Sequences