NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000433

Scaffold Ga0209188_1000433


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000433 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40589
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (91.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F035670Metagenome171Y
F086588Metagenome110Y
F093497Metagenome106N
F098900Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10004332F000166AGGAGLFCEHQLGLIQMNIPTSQDAEFFALCVKKWQSILNLSDWRIEKGLKPAKQAMASVEFNEGARLATYRLGDFSAEKITHESLDATALHEVLHVFLHDLMTAAQDPKSSAEEIEKQEHRVINLLERLLTKDSNGFN
Ga0209188_100043341F086588AGGMIKYDGYDEAIIGPAYIWRDNTTVGVLVYDAEKIREILMRDGCSAEEAREFIEFNIEGGYLGIETPVLVWPDDIWDEEE
Ga0209188_100043342F035670AGGMTEPELNIWEKALGWRKRQMVECQINEVSNKIRNDTLEEVAKEFDKMKAFGDTSASFASFVRGMKR
Ga0209188_100043358F093497AGGAMATKYPNSGMLGKAKQPKINPNSPDYTGSIDVDISLIKEMLEDAREEGADSINMKIGAWIKEGQFGKFFSIKVNNYKKPAAQQRATPVNDDDIPF
Ga0209188_100043360F098900AGGAGMEDNRLVPYSVHLKKDIYDKLKLAAGQRKASALVRDAITMIVEGDDAFNAGYNKGVRDSILEIYEDDIASRIHFDDEVISVRLVERLEVMIVNQNVKAKSNAKKKT
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