Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1000556 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1000556 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35337
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (71.19%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

35337

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (71.19%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F011483	Metagenome	290	Y
F012435	Metagenome / Metatranscriptome	280	Y
F021045	Metagenome / Metatranscriptome	220	Y
F030055	Metagenome	186	Y
F031035	Metagenome	183	Y
F035727	Metagenome	171	Y
F062385	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100055610	F021045	N/A	MAQSSVQRNAGQTVALSVTSTAHAAVLIDDSTNDQINYTAFLNTGAAPIAVKWGTADPGAPAFPVDGTNGDFVLAAGMTTPLILATPTTPYYLTAKSNSATAGILYVTPAADQS
Ga0209188_100055621	F031035	GAG	MKEIIQMRINDLMAKGRELEQQLHQINGALQQCQWTLAELEKDDAEKVDQPESI
Ga0209188_100055624	F062385	AGGA	MGYEAKKIPSAISSDMTGEKKVSVPKMDREYGGAKSMTGATPPKGATSSDTSGERKMKIQGGVGMGMADGIGLREASHMGMHDGRKGEMKGGTSEATCYEHKRYEHAQDK
Ga0209188_100055628	F011282	N/A	MKKIKNLVVITGTYTNKDGQEKKRYQTIGSLFEDGENLKIKLDTIPLVDGGWTGWANCYELEAPAQKPRKMGFDDMPDDIPF
Ga0209188_100055632	F005737	N/A	MKVLTMFEIEKYTKPTDWAQVALYVVSVVAIIVVILDVFFWRA
Ga0209188_100055633	F030055	AGGA	MRHIDTLPFVDAKIMIDQGLEHLSIEHGDMAVPVDCYFCPVTGNLWHCYLGTTELLGVMSATAIAELEREFAPKSLYESADYV
Ga0209188_100055637	F035727	GGAG	VNEEHRQVANSILARLKDGEEFSRSTVDQALRDTGDIAPDGSKGLDQEIQQEIDGGWETGCISMVAASLIRLSEKAWDESRRRITETHE
Ga0209188_100055645	F011483	GAGG	MSDLVTYLRSEIKELHTILQETQLALAMANSKLQRRTEPLTDERIYILYTRSLDWRQLARDVEADHDIE
Ga0209188_100055651	F012435	N/A	MEIDPVKYGVLWQKVESLEAKIDKLETSMDRLLELANQSKGGFWMGMAVVSAISSIAGYLTNWLHKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1000556

Overview

Ecosystem & Geography

Associated Families

Sequences