NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000706

Scaffold Ga0209188_1000706


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000706 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30734
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F009327Metagenome / Metatranscriptome319Y
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F084140Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100070611F009327GGAMRGTKVQGRFKIDFENKSINEGVVDELRDPVGSIVDWWVWDATYMSTNPTDVYDDTYDVSSQTPGKGRRWKDSLEVPVIMAQQLRGTNVMNERGWYTTDTLRLIISVADAERLLPALLTEPNLHIKDRIVFQGEVFVPTRVLPRGRYANNYSVVTIDCNQVNSEELVNDPQFLNFADLNNQTVTYGYGNGAYGTEPYGV
Ga0209188_100070630F008023AGGAGVANKPTSPLDATGLAAEKAAKANQAELRKRKDEISIAAQIEAESLENDIFDPKNPETPLVLDDIEDVGVTVANDSVVIRTITDIEEMTYGVGNSYTFKAGVKYRVPSGLAAYLEQLGYIWRPN
Ga0209188_100070637F084140GGAMFTIGKCITAWQKSPTEEMLDEVVMGAEAFYEIAKELRRRA
Ga0209188_100070638F012098AGGMPKVHNIGPVFVQVTKFPYEWGSKVVVRGWTQEIEEPFRTSKPFILRLPKFKALVCGRWTGLKTEEEALSVALETREVTYEDFTEEAGWTPAPNTDSEESVEDIYARLDSVDGTFNVHDWQVYYRLAKESD
Ga0209188_100070641F016389N/AMTLIRKFAIQGHSVPSSAHTPRGPFPPEVLAKPEMAVEEHHSDSLHAGLDDVRFFKCKECEEVLLQDELDNHECGD
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