NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000955

Scaffold Ga0209188_1000955


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000955 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25099
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040597Metagenome / Metatranscriptome161Y
F054848Metagenome / Metatranscriptome139Y
F091943Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100095512F054848AGGAMTDVTPQAAAQLYAKGMPVVEVAKELGVTYGKARKLIDASGTTIRDASTRLKGRTRPVK
Ga0209188_100095530F091943AGGAMQKKWCLLKESDGGRGAAGRKKVYEVTVDGTIVRTSWGMAEKATRQSEVKNVYSESYARQLAFMKVQEKLDKGYELAYAV
Ga0209188_100095538F040597GAGGMSATRKKNASAGVWEIVDVYTGERISKFRARKRADVERYLQMAHLGLKRPIEDFEARFITEWEDIDANTNQA
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