NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1001019

Scaffold Ga0209188_1001019


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1001019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24091
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040597Metagenome / Metatranscriptome161Y
F051128Metagenome / Metatranscriptome144N
F054848Metagenome / Metatranscriptome139Y
F087184Metagenome / Metatranscriptome110N
F091943Metagenome / Metatranscriptome107N
F093301Metagenome / Metatranscriptome106N
F101152Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100101913F093301GGAGVTTLVAIQGDGWSVIGCDSRSSDESGRYLEMATHKVVENNGILIAGSGAGRGSNILQFGWRAPRPKAGQDLDVFMTKTFIPSMRKVFVESGYDMKADGEAAAHDSEFIVSVYGVLYPIYEDYSWDREERNVYHSGSGSDLALGVLEALNYQKCKTAKEAEKIVYRAVEIAIKHDIYSGGNIHTFIQEE
Ga0209188_100101914F087184AGGAMNIEDLVSQIESGTFDSGLVKIKDAVDSRLKASRVSRTIADYHIGDTVVFNDLTGTRYMVGRKATVTGMKQKKVVVRLETPVGRFEKINPITGKSESADIVVPVAIIDLVK
Ga0209188_100101916F091943AGGAMQKKWCLLKSSDGQRGANGKRKIYEVTVDGPVVRTSWGMAEKPVRQNEIKNYRDEFYARQMAFMKVQEKLNKGYELAYAV
Ga0209188_10010192F051128N/AMAHTPDLPKSEAEFLASLSKEQLWRRVKDLNDAGWTLQSIADAFSPPRRRSTIRSWVIKDTPEFEFITATPTPPQPKAKSRRKRPRSPGIPLHEQLHIARLSPVARRFRARTNPSSVSFTANQELTSIAGLLYNKGVTVSELARASGVTYRAMKRRVDKALTQ
Ga0209188_100101926F040597GAGMSKNASAGIWEIRDVHTGERISKFRARKRADVDRMLQMASVGLKRPLADFEAVYLTDWE
Ga0209188_10010196F054848GAGGMTTATVTPNQAAALYSAGKSVDEVAKELSITYGKARKLIADSGTPIRNTSDRLKGKTRKV
Ga0209188_10010197F101152AGGAMTQGTVQRDKIYVYDNCQQCGEQNVLVYECGEQLLCAEHYRDKARTVKRVTPCDKCGAGNAVRDPSHRRNEYLCWSCHQENGFAVDSSIVKRAIVSLVNNFTQGTKIKCDAAGYGTDCDNNIKPRGPWNGRSLCDKHGKIPPKPVKSKKS

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