NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1003490

Scaffold Ga0209188_1003490


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1003490 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10825
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008554Metagenome331Y
F034176Metagenome / Metatranscriptome175Y
F093145Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100349018F093145GGAMENKDIESFVGELDELIMKYGDVFAAHNISGMLLSRITLLMSEDPSVGKELLKFVWNKLDELEQSNPGQYL
Ga0209188_10034902F034176AGGTGGMRHNYAKQRDSDEDFECFISKFECRIEDSREYNQYVRPTPYYRDVCSSDDWRMETKITPMKAIHLTSDNLARLVAEQEHIQHLSKDAEYGKKCWEHERRDSTVRNKNPAVEKAYQRYMMLLELARN
Ga0209188_10034903F008554GAGGMGQLYEYSDLEQEIITGAGNAMAREIDREVLWGMLQGMGWTRVLLPNYTGNEQAVEIMCWLEDNCKGSHKRYGRDVIFEDARDANWFILRWGTV
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