NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1003918

Scaffold Ga0209188_1003918


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1003918 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10009
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F003265Metagenome / Metatranscriptome496Y
F012435Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10039183F000166AGGMSNIPTSQDAEFFALCVKKWQSILHLGDWRIEKGMKPAKQAMASVEFNEGARLATYRLGDFGEKITDEILEATALHEVLHVFLHDLMAAAQDVKSSEEEIEKQEHRVINRLEQLLLKDSNGFN
Ga0209188_10039187F003265N/AMKWFWLFLICLVFWASAKAPCTVTDFYALSWLGNPLERHQRLSEWLTANGDNCSSEQLAGIWNNLAAWAGTADSAELRSKVLYYYAKAVEREKK
Ga0209188_10039188F012435N/AMMSDIDLVQYGVLKQKVESMEAKIDKMEGQLDTLIELANRGRGGFWMGMVFVSAISTFVGYITHYWSK
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