NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209188_1006750

Scaffold Ga0209188_1006750


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1006750 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7068
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F083886Metagenome / Metatranscriptome112N
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10067503F050981GGAGMRWLAIICLSASSVFAQISDDELSKISKEEIVLTIKHLQTLTAEAKTAADRAIASEARMQAKLVDATNALMDSQSQLMKVDQDIRNLQAQADEQTRIAVGAKADAVKAQKLADHRGNLLGWLGAGLLCIVCLRLTSILPPPYGFLLPVVAIPAGYWLTRLLL
Ga0209188_10067504F100656AGCAGMKTLKNSLVLLSLCTLCACQTPRPKPSPAVVSVAQAKASTGAASVAVRSAIDDSKATTTEINRIKTTQDRVDAKSVLILKWLEFQR
Ga0209188_10067505F083886N/AMLRNEIFGDVWRGLVGIAGSWVAVISSVHEDIDSIAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDENLKK
Ga0209188_10067506F022372N/AMSTTTITIDVAFLTTEQRNAATILFARSGGWQPLVDGEPNPVSAEDYGVTMIANYLRQRVSEQSAYDAQIAAAQATADLLDGVSVTTPAEFNALFPTPPITTPV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.