Scaffold Ga0209188

Basic Information
Taxon OID	3300027708 Open in IMG/M
Scaffold ID	Ga0209188_1007222 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027708 Open in IMG/M

Scaffold ID

Ga0209188_1007222 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6728
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6728

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F068494	Metagenome	124	N
F073535	Metagenome / Metatranscriptome	120	N
F086640	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100722210	F068494	N/A	MDRLESILVSFFRNIYPFITKLKVDKDSDGDDVEYTLTLFCDGKKFQSYLPISPNFIDGTGKLKKDLLDRPFNHFVSVTDNTQSNVGRAKTLETGLKRDFYLARRMSGSEFKSGPVTLRIVLQ
Ga0209188_100722216	F073535	N/A	VPKYYTFDVETYEDRYEQVHVTYEGQIDGYFTEDQLYKSFYELGSGTIFNYYDFDETDRDYGDGEGNGIELRKITMVSDVIPESNKKRKVMSIKESKLDSFIDSLNESETKFLIEKLQKKLL
Ga0209188_10072222	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKILLFVVDKNGIHLFTE
Ga0209188_10072223	F049442	N/A	MNKKNLEQGLTKLLKTFFTKKYDRDFSDLTVVLDEYEEDADDVDDEGNWSSAESYYFTVYSNNFDGLSIRELYLLTRELFGNIIGNRNWIEINFKTYSNYEN
Ga0209188_10072224	F049433	N/A	MKKFIITEEEKTRILGMHQEYGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVNTVLKKLMMSPKFSTDETLFSLIEQGKLVKAYRLHRDLNTNVDYVDYELLDDMLNNPETKDSIVKLLPNVKNLLTNFFS
Ga0209188_10072225	F086640	N/A	MKKFILLEEEKLKIKSMYGLTEAPIPVRQTTVMDTLAVPSNKLLFQNSTNNNNIIFLSVRDDAGKVIPNTTYKYKIGGSYSFFDFSVNIRNLKRDAQGNLIGEVLPSNSMAASAMRSLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSTKGQTADIDAGQGINVTLQYIGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209188_1007222

Overview

Ecosystem & Geography

Associated Families

Sequences