NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1013136

Scaffold Ga0209188_1013136


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1013136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4551
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F006264Metagenome / Metatranscriptome377Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_101313611F001059AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDLVGKPKEDQYQVAKNALEGKKIPSDYTTDLNPYLDKKELIPEDAIKPVPPRSAELPPEESRIHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVMGPLEKMAIGKRINKFGQEQPEKYSWLDPRTAETLMRRADGTYTEQGRKLFAYCSGEKGGGIWPMIDRDLVNFTQKNVTDPWA
Ga0209188_101313612F006264GGAMEEHTNLFRQKLPAQAEVCARKALERLQKDLQNDHLLSPQDVFYLASAAQILLDIRDLYGKK
Ga0209188_10131364F001915AGGAGMNWTLAHPLSDAADIVWMADTFFGEEADGILRRDKAVFTKNVTIAATVQLFDKNREFLAVCRTPDERLLGFCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVKLIHQMIDQHILWANMCGIPVICSTSIRAEHDGFMKIHKKRGFVVNGSYAWLRTEEGMKCLMS
Ga0209188_10131365F012670GAGGMLDVVNTADKKRVNAAQKKAMKLATGQIIPEVKPNLGGRPKSVVNRVTEYGALFNKLNDERVAKGLSPLKTAMEVLIDAMQSDEMDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLTAIRKV
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