NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1020504

Scaffold Ga0209188_1020504


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1020504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3396
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016150Metagenome / Metatranscriptome249Y
F024781Metagenome / Metatranscriptome204Y
F036593Metagenome / Metatranscriptome169Y
F077308Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209188_102050410F036593GGAGMINLNFNIANPWRTDKVWNTLWSKSGSITKNKAWEFNGYRTDRIINTEFHWSLKGDHAGARLVFGVFGYEIELEFYDTRHWDFEKNTWKCYK
Ga0209188_102050411F024781N/AIPVLFICMNGHCDFMQAQAFYKSEAQCRVSIDNQKAHMLEVAEQSGQGKYTILEGTCINAKVEDPRNKA
Ga0209188_10205044F016150AGGAMTEEKKKNPIAMALEAKKKNALLNSGLGKAPKSQGPKANSKGFGGASVTRRAGRGG
Ga0209188_10205047F077308N/AMFHIKRFIDRVAVIEGRQGKDVVIPLTDARSLRDELAKLLIDHYEVTEGKKNTSEVIEVEVIGGKF
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