NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1023753

Scaffold Ga0209188_1023753


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1023753 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3068
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F059760Metagenome / Metatranscriptome133N
F077016Metagenome117Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10237531F035668GGAGMSCKNCQGNCACTRVNAINIFSQDYKAGVSEGQRAEATRTSDALIELERKQVITNAQLQAILDLILEKLTDQVD
Ga0209188_102375311F011142GAGMAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVIASTPKTEELPF
Ga0209188_10237532F059760GGAMTETKDVITEAITRSRDNAIEAVISIVKSYKDLQLPAQPKEAYDLGARDTLDTLLIHLNKFAEGVKAGRNE
Ga0209188_10237533F077016GAGGMPNTAENVREFYRRQGEERERARLINLLKDQNVIRHCGATGKLVFVHCNNLEVLYLQDDLANESAA
Ga0209188_10237536F102815AGGAMNTEELFLQAINAYKAWINTGKDFVNHADLYDVWDDAVMAYAQAVHLQRNRAVHQILQGLELIK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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