Basic Information | |
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Taxon OID | 3300027708 Open in IMG/M |
Scaffold ID | Ga0209188_1041307 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2112 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001915 | Metagenome / Metatranscriptome | 617 | Y |
F012670 | Metagenome / Metatranscriptome | 278 | Y |
F040590 | Metagenome | 161 | Y |
F099270 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209188_10413071 | F040590 | N/A | MSGYGTIISGGARMTKGLTKGINAKLGGFAESHKMSAILATSVRDTFNQNPLSDQHLNDINVKAAKKFTTPKLPAKI |
Ga0209188_10413072 | F099270 | AGG | MNTNFLYAQAPNRTGNVDKHPASHVGGVTRVTGPKHGTATPKGNQGAPACSTPANNKNAGVTAGRKQKVMVSTHADYCGTIKNDGYMDKSVKNYLG |
Ga0209188_10413076 | F012670 | GAGG | MFDEIRPEGSLVSSEKKLAASKARYAQKKAMKIATGELIPEIKPAIVGPSRTKSIVNRVTEYGALFNKLNEERIAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLTAIRKV |
Ga0209188_10413077 | F001915 | N/A | DVADIVWMSDTFFGTEADGILKRDKAVFTKNVTIASTVQLFDKNREFIAVCRTPDERLLGFCWYDRGGYTTYANEEISNAKFHHVDLTLPAKTRVKLVHQMIDQHILWAHVCGIPVICSTSIRSEYDGFMKIHKKRGFTVNGSYAWLRTEEGMKCLMK |
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