NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000020

Scaffold Ga0209599_10000020


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000020 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124368
Total Scaffold Genes205 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)153 (74.63%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011487Metagenome / Metatranscriptome290Y
F013888Metagenome / Metatranscriptome267Y
F018929Metagenome / Metatranscriptome232Y
F020167Metagenome225Y
F020910Metagenome / Metatranscriptome221Y
F022197Metagenome / Metatranscriptome215Y
F029107Metagenome / Metatranscriptome189Y
F030765Metagenome184Y
F057416Metagenome / Metatranscriptome136Y
F068817Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_10000020100F057416AGTAGGMSKSTENAPPTFYHHKPIKKFYLDGVIHDESALGRLKAEYVRLLESEMRLSGYVPRIDILPDFTLDYNHKKKYFEFQLTVHGTYTGRKQSEWIAGIDGSTAIYTQKSKSKEFSQEQV
Ga0209599_1000002013F022197AGGAMTLETETMEDPTMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK
Ga0209599_10000020161F018929N/AMTNQEIAQLLDQESYRIWDTTKVIKNQDYHDGLVKGLKMASKLVAKL
Ga0209599_10000020164F030765GGAMDTEQTFDQEFSVEEITKAIVDRAKSEVKSKFGNKKRHRQ
Ga0209599_10000020165F068817GAGMDINEFMTDPWKKFNEMRNTPHECDYDYRIDSSGAMFFEICKLCLDTKGVVEMDK
Ga0209599_10000020182F020910AGAAGGMWSKYTFVCDPEECDAMVEFTARDGFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN
Ga0209599_10000020184F020167N/AMRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEVC
Ga0209599_10000020191F011487AGGAGMTYENDEILDEYYATVCPSCKENSVDEYEDKCTHCLLEEMSYTYNEDIALEMSLGLDY
Ga0209599_1000002049F029107N/AMTTHALTTLSSTSATQLTPNGMHSGMDITIQNVDASAYVYLGGEGVTASSYGYRLAPGSAWSVELPPLDALYAITDTNNSKVALFKMGLE
Ga0209599_1000002058F013888AGGTGGMATIGILPASGRASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEIRVSTKAEWVPIIKNMDMNIKLIVKEPSTMSDAINFMVGEYNDTVIVGMPDTYVLDAPGNIYKEMLKETNADLVLGVWECNDELKGRVGQVLLSEDKVIASEDKSDNCDYLDMWGIMMFRKNMIRYLDSSLEHPGKQIKDWISEGKNIRAVRPGGKYMDIGTLKGLKNLYKEMDLK
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