NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000044

Scaffold Ga0209599_10000044


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000044 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87910
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (76.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F004092Metagenome / Metatranscriptome453Y
F011386Metagenome / Metatranscriptome291Y
F017301Metagenome / Metatranscriptome241Y
F030765Metagenome184Y
F045752Metagenome / Metatranscriptome152Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_10000044100F017301AGGAGGMNTEQLKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGVLPDAKEVEKALKSAKAPVKKAAKKAAPKK
Ga0209599_10000044112F045752N/AVADPNQTPARGEWACPCNGCAKAVAFERKQLIELFEQAKHDYLVYRGSSFHKDTGELMWAKDDAMAYAEGIDSVIELIKDRMPKPKPKK
Ga0209599_10000044123F030765GAGMDTEQTFDQEFDVKETTKAIVDKAKAEVKAKYGNKKRHRQ
Ga0209599_100000442F048982GAGGMISIKLQDVLATCRQIRGNDHDSGTHYLLGYLWASMSDKEKQRIATLFTNDLLEQEKNK
Ga0209599_1000004458F004092N/AMADFKIFSGKFPCKKCQEEVLSLRLWPESGDATWMCSSKHISKVNLLPQKKKKADFKSE
Ga0209599_1000004466F000264N/AMTLMKNRLTNNTMAAKLYTSEAWLRKRFLMDKKTPQDIAKECGTSVETIYVYLAKFGLRKSKR
Ga0209599_100000448F011386GAGMIDLTLTTMQGNTRKINLMSKQEVFDFIELFKSTLHENQRVKVTCDLLGINGYLQGTK
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