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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000056 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81855 |
| Total Scaffold Genes | 96 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 83 (86.46%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F008131 | Metagenome / Metatranscriptome | 338 | Y |
| F035307 | Metagenome | 172 | Y |
| F056615 | Metagenome / Metatranscriptome | 137 | Y |
| F060898 | Metagenome / Metatranscriptome | 132 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000005637 | F001106 | AGGAG | MSFETLKVAELRKVAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPEDTVLVRMTRENFRYDIQGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA |
| Ga0209599_1000005639 | F056615 | N/A | MYDLVESILTMFMDVYKPVDSQDPDTGSIKKEWQYDRTVSCSAKGNISNSASTITKDGQVFSNKYRNEEMLQIRTSEQVTLREKITNIRDYENNVIWEELNFPTNTPTVFEVVGITPMTDPFGGIVGYNSTVKRSENQTIGQ |
| Ga0209599_1000005640 | F035307 | GGA | LDNSTLLVTAASGLQKGMSGTSGTILKDSTVAQISAAVYYHAQVVSKLTTSKAFEKKFQSVIFKQIDQDFGLYVDSQSRINPKSLHHVYEWNKVGNKGSRLFKLSVLSTDGLSFKISSSFLPSKSAVPNEFGSRKHVFISKASVMEAGMPLVIRPRFAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFRIAYAQFFTGNLVNSSIKKSGFQQIFNSSLTKAMRVPGDVRKVKYSFSPNTLKMQADSALELAFGGAS |
| Ga0209599_1000005641 | F000258 | GGAGG | MTDYKADVMIDLRKFLWSQLKSNNIFEQTDYYSDNIGEEIIPIIPVQQSPELNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDANAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHIDTAGRFL |
| Ga0209599_1000005644 | F060898 | AGAAG | MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVDEEDSEPQAKTFDDVKRKALGIEASGDDIVSLQGSLAAQAGFGIGAGLGYTKE |
| Ga0209599_100000566 | F008131 | GGAG | MSVQRLVPLHAVALATDPANPRIGDIYFNTAESSLKYYDGSSWSPVGGAITGLLDHIHTYDGAVYSVESVEVPSPGVVDGGAA |
| Ga0209599_1000005680 | F000369 | GAG | LSQHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLAVKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVKILKEATATCPKCKMEVAKRLSQITGVIESVPVEEADVV |
| Ga0209599_1000005682 | F000376 | AGGA | MSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVIEYKRIWKLAGHRPMGNIRKHFSEYVQQIVESTIDKNEDGTL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |