NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000219

Scaffold Ga0209599_10000219


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000219 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40778
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (86.76%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002130Metagenome / Metatranscriptome591Y
F002689Metagenome / Metatranscriptome536Y
F002997Metagenome / Metatranscriptome514Y
F011148Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000021910F002085AGGCGGMNVIAPVAGTNNIRIADFIRINSGVQTFRFCTAASDITVPAVDATAFNAVGTLIKVGDVQRDIKSTSNDTSVVLTGIDTAMLGYVLSNTVKGSYIQMWHGFFDTNGALITTGGTGGLYQFFSGYITSYSIQENWMEESRSFVGTIQIGASSTQLTLQNTNAGRYTNDDSWQFFNSGDTSMNRVSFIETINYQFGKRE
Ga0209599_1000021911F000934GAGMSLNTILSNAESVTINDQRFVGQTVSRNQKILTSEIITVVPFQFTMRPMNYLLYSQSRGILNALRIPDKALEQYLNFGSTGWLNYIKYQADMTPAQIAACQWQTSSANKTLVLGSLPSISAALYLFRIGDFVQVGRYAYIVTADVQRGAGATVNVPVHRNLITALTSTVACVAGQYGTTVSLGGSTYTGVTFPVILRDYPTYTLKPMTNDSFIEWSGEFSAFEAVL
Ga0209599_1000021921F002997N/AMTIARFENVTINQLTFGANGFGEQTTTEVEWFKTRARVHSVSNHVRISEKYRVYADVVEFTFNYTPNTREIVDNQNLYAVVWKSFSWRIDSVRETDDRMAVKMLCVRNDPQTAV
Ga0209599_100002194F011148GGAMAVFNKNSLTQVSGFDNPIIAGELVWQQKTFWNLALTGDDNVTPVDLNGATIDAQIVRRTLSNVKDTRYGLSFDIADYTPTPTAVPLTILNRVNAAGTFTLVIDDTSWGLIASDPEMSIDSVNGAGFSGRIKISFPASGVTIPAEDNIIFLFFIVRSDAIVKL
Ga0209599_100002195F000324GGAGVKTVTPCFTVTQDGTTLNVYHANKGEGLPKHEHVFSHLTMCHSGSCLVRNERRSLLMTKDTQPVNLVANEWHEIEALEDGTVFVNVFAENKY
Ga0209599_1000021965F002130N/AMSEDKLNANTTLDKVLGYVDSPFKLFAILVMGVVAFAGYFLWQNQEFMRDAYKESKKLPEINVSRADETAAMLFKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSSNNNDVIALMTNQIPCSEYRYAQSEVGLWYLDKGVTYTCRVSVPPDSHRFVGQVTVGWSEPPQNLEQIKFMLEIASAMLTKRGN
Ga0209599_1000021967F002689GAGGMATINATEARLDTHEEVCAMRYEQINARLKRLEGIIIKASGVMLVGMAGVIWASVMPHLA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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