Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10000378 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10000378 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29785
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (22.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29785

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (22.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001780	Metagenome / Metatranscriptome	635	Y
F001923	Metagenome / Metatranscriptome	617	Y
F028738	Metagenome / Metatranscriptome	190	N
F036603	Metagenome	169	N
F043355	Metagenome / Metatranscriptome	156	N
F068577	Metagenome / Metatranscriptome	124	N
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_1000037814	F043355	N/A	MENQNDRPPLTTLNASGKYVLKMSLPKEDKVKVYDDGVSARLFFKTAEGQCFSKSYGTKYGKSLAMLVGKISGKFVSEPKADLSVPAFLDYLRPATGIYFEVEVEVTPDGEWQGKPQFKYKLNFPKGKGSAASTIPTPTDW
Ga0209599_1000037818	F028738	N/A	VTSTTSKLGACQPINVILADSTIVLMWIVKTEAVRQFSISDMKQAEVELADFDAVILSKQSRHIPEMAGATFEKDGNAYIIDAVSQSVADKINKKSVYLTPIWLSARSFFPR
Ga0209599_100003782	F001780	AGGAG	MARLNDMTAPAKEAKTFDDWFFKQPKKAQDKMRENGVLPYREMVPSKHVFDIDPNHPAWAHTDTQGVRTEVDSFISRDHVGVMLKAFIDAIAYSNNFEFRRHVELVRWALSLPGCLDSRTIGKMHGISHFTMRYRARKIMRLVNSDACGLFPHVNVRRDKNKVNRIPKVAK
Ga0209599_1000037830	F036603	AGG	MAKRNQPSGGSEANLLWATVALVVCAGMAACAVAFISDYILSSFQDTNAMVMLITDAGTKSDDARLEGQLTSATLGLKACRDLGWALAVGCVGVGVAVFLRFRRQNAS
Ga0209599_1000037831	F001923	N/A	MSPPPAPSIDSEQTQALVKDGLVASILGGLAMTARLLLSTEPVSFGWVVRRVSAAAITAALVGYGIQDHITSPGLRMAAIGACGYAAPEITDFVILYVKARGEAEVAKVTKKPNGKKKPAKRRK
Ga0209599_1000037834	F105180	N/A	MYIALLFLTGLLIGFVAGLLVYRKHLDKLKAAEGKGKTILDALKGK
Ga0209599_100003787	F068577	N/A	MSRRQPDPLLVKVMAAIHQTAETPPKGFRTINGWAKVWNMERTAARITIHKGMKLGLIEKRIYRVVLRRDAKPYPTAHYGEKAGRRRT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10000378

Overview

Ecosystem & Geography

Associated Families

Sequences