NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000422

Scaffold Ga0209599_10000422


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000422 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28129
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (25.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010084Metagenome308Y
F019827Metagenome / Metatranscriptome227Y
F023849Metagenome / Metatranscriptome208Y
F028170Metagenome / Metatranscriptome192Y
F045558Metagenome / Metatranscriptome152Y
F058148Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100004222F010084GGAMDITEEVITHLKNNIKTKIGVSSIDGVGVIAIRDIKQYEEVFPLWDYETGIYIIPIDRLSEIPNEVVELLDMYFINDECGYKVIRLFKGLNFLFHGYSYCNSAWPNENNVNITNNGIAMRDIKVGEEILEWYNENIN
Ga0209599_1000042224F058148N/AMELLDVSGMSVYEYCNFVESRALHLGISSFELNMEYYFDRDLISDSMYERAKAELLERRS
Ga0209599_1000042240F023849N/AMKNFNLHTNNSQSALRNEWCGIRMFSTISNPAQLELGKVDYISTQLEDDTDVG
Ga0209599_1000042264F028170N/AMALKKLMKGLQASLEKEMVIHPKTKLGMWIHNFKMNRIECRINDIKKELSNRKTKK
Ga0209599_100004227F045558N/AMIPIIRVSDKMEGYAFLVIDYSQEHNLLFTCAMDDGEIWTLSNHDIRFCKNVSLDRSEVK
Ga0209599_1000042273F019827N/AMIANILRGTKRKEYSSSKVRKMRSDRMLTKAKKDGVSNDQVQFYLGKLQAAGHMRLSGMSSFDAKIDADVFSEGRAMKTTTIKFNTIIEKGMGEKPHMTGYLTSASDSDKQYKLKGWFNEDGTFRIELVN
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