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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000753 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18787 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (82.69%) |
| Novel Protein Genes | 14 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
| Associated Families | 14 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F003393 | Metagenome / Metatranscriptome | 489 | Y |
| F003965 | Metagenome / Metatranscriptome | 459 | Y |
| F005348 | Metagenome / Metatranscriptome | 403 | Y |
| F006844 | Metagenome / Metatranscriptome | 363 | Y |
| F008305 | Metagenome / Metatranscriptome | 335 | Y |
| F009882 | Metagenome / Metatranscriptome | 311 | Y |
| F011386 | Metagenome / Metatranscriptome | 291 | Y |
| F018352 | Metagenome / Metatranscriptome | 235 | Y |
| F019826 | Metagenome / Metatranscriptome | 227 | N |
| F020910 | Metagenome / Metatranscriptome | 221 | Y |
| F029439 | Metagenome / Metatranscriptome | 188 | Y |
| F081245 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000075311 | F020910 | GAGG | MWAKYTFVCDPFKCDSLLEFTARDGYGFPNGIVSMTCPCGREMQYVSVEDIESKFYEPVIKVTPPKVVKINTNPYN |
| Ga0209599_1000075312 | F008305 | GGAGG | MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVADVG |
| Ga0209599_1000075316 | F009882 | GAGG | MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEATYLTSKVTDLEWDLHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVSIEAELSSYDYDADLNVDEVSLEDHY |
| Ga0209599_1000075317 | F000684 | AGGA | MTLSGYTYQIGDLFTTSKTGVTGRIVKFSPINSKLTRVSLQLANGSRRLAMVSTTK |
| Ga0209599_100007532 | F019826 | N/A | MGFMRRSIRLAVSKEEKVANKMVALLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDELDRGVYYGTK |
| Ga0209599_1000075321 | F003393 | AGG | MAATIMNMEYVKVDILTSGQLEVDDLIQVGDEVVSIVEIVSLADGYTLEIINDFGEKEVIEVEEYEQFDLMMLQ |
| Ga0209599_1000075325 | F018352 | AGGA | MGILAHDACYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKENA |
| Ga0209599_1000075329 | F005348 | AGG | MINSVMAFDCDECNGQGLIFWGNDLDYNVEKCECNDFALGNLFSSGEAN |
| Ga0209599_1000075331 | F000447 | AGG | MGYIEIFRLDEKGAGWVDLSEATPDELLTLELGLFQEGAL |
| Ga0209599_1000075335 | F081245 | AGG | MIDFVKQLELNNYLDENQDPLAKMLDELILKGEYK |
| Ga0209599_1000075336 | F003965 | AGGA | MNSNVIITVCKSHVPNKSAISELVDTQFTFCEVCENNIERWYNDSDPERLPMWTSWQVSK |
| Ga0209599_1000075337 | F029439 | AGG | MTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLELLATKQGVVSHRYLSPNESRWVMNNTKVGN |
| Ga0209599_1000075340 | F011386 | GAGG | MKVTITSMQGNTRDISLMSKQEVLDFIKLYRSTLKKNQRVKVTCDLVGIDGYLQGTA |
| Ga0209599_100007535 | F006844 | AGGAG | MAKWDIEVIFEPTGTFMNFEYETDNEDEDSIFNEINNQLSIVPFLVEKNEEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |