NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000956

Scaffold Ga0209599_10000956


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000956 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15440
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (86.36%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Associated Families22

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F000980Metagenome / Metatranscriptome814Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F002598Metagenome / Metatranscriptome544Y
F003603Metagenome / Metatranscriptome477Y
F003663Metagenome / Metatranscriptome474Y
F003690Metagenome / Metatranscriptome473Y
F005177Metagenome / Metatranscriptome409Y
F007468Metagenome / Metatranscriptome350Y
F007470Metagenome / Metatranscriptome350Y
F008132Metagenome / Metatranscriptome338Y
F014129Metagenome / Metatranscriptome265Y
F014142Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F024319Metagenome / Metatranscriptome206Y
F034924Metagenome / Metatranscriptome173Y
F049621Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000095610F002598AGAAGGMATKLYTIESLLVGKNYRSRNRHFSGEIISAEKRDGIWYGENTEAYLIEINAGGLRNKFATIAVKVGE
Ga0209599_1000095616F049621AGGAGMAELKYFNALINSVVGNDEEKKAAKEYLAELDPEIWGE
Ga0209599_1000095618F003663AGGTGGMLATAIEILDATKNSIFDEDIMGMAGELHTRRNELPDEVYAKYLFMYSAALSSKVADLVTKILLTEQEMSDLIATIDEMDNLSETILEENE
Ga0209599_100009562F014142AGGMTNTNVMVVVEPTHPMSSSNTKDNNIFRLANGNYISRMAYVYMVMSENLISHRYLSPNESKWVFANRKDNN
Ga0209599_1000095623F005177N/AMKNRYRVEIYDEVKANDLTIYSEQGVDKEYLTEIVFSNLRRFSGNIRAYVYDNLKKKKTTALFLPMEVLPKKTELTKLLG
Ga0209599_1000095626F000980N/AMDRILICETPAILKASFLCYGSQIKSPETLVNVSGQVYNTRMTTYNKYTWVCTGDCDALIEYTYKDGFGWPNGVTQLTCPCNSTCTLLSVEDVTIPYTDTPINETKGNQMEQTTTPAVPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKTNAVLQGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0209599_1000095627F000311GAGGMYFELTAPDRLSMERAYWDAQMIGLDPQAMAPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR
Ga0209599_1000095628F007470GGAGMDYQDGFEDGVKFAREVIVNNIRLWAETSEDGSAYDDIADRLEFGTVDYDL
Ga0209599_100009563F024319AGGAMTNRIWESRNDYLTPSNYVACSAGCGRVTAWTLCVMCGGEYATHALVNVR
Ga0209599_1000095630F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWSGHNMLANLAEAVFKARPRWNDTSYATRITISQMIGDDWNSETGWGLHVNEIGDNEHKIAIVDFNQQTFSLHEEAPRNDLDNKVNGMSNEAIFTMDLSNFVEKYADVTISI
Ga0209599_1000095632F002387GAGGMSDPHGIIGKYRKGGGIMSSFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIYDEFNKFYNLKEGDEDYLC
Ga0209599_1000095633F001460GAGGMLGYDLEALNRMINAIHDVKLFYLRSPSDLMNKDPLIKDLEDAVSFLQGLWAEGYFDGYE
Ga0209599_1000095634F007468AGAAGGMATKTSRFLEYMKLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNNSNERYNND
Ga0209599_1000095637F000441GAGGMSDQYIDDVLNRAQKLLWGGSETENIEAHNMIAKLIKDRMSEKEGTNE
Ga0209599_1000095638F001019AGGAGGMSNYEPSLEILEVNYSCSPGGIDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELLADL
Ga0209599_1000095639F034924GAGGLPIYRVFGTKYTNYYTIVSAADEYEAAELANSRPSIDWNEIPTDDEIEATDVFLDEDTSEDLQFNI
Ga0209599_100009564F008132AGGMTKWDTIQADVADAYTHFDEEEAYNNMLDDEEDFFGFAKSIEIDHLTDEQLDEVFNMFGD
Ga0209599_1000095640F000852GGAMATKREYLKSKGITVGARGRFSSAAKQALQEATSNGMTFEAEKPTPKK
Ga0209599_1000095641F003603AGGCGGMKNKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVIEVVAWIIEKQARRYEREVENGGMVSEGLAIAHKLDLVIDKIKDKNTFQHVKLPITGEERKQFINQIPNPKEQSYRYSYLNETDTRGDKVYIEHPFI
Ga0209599_100009565F003690GGAGMIPSGFELVISNEYGIELDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK
Ga0209599_100009567F014129AGGTGGMTTLIREITLSNVQADEANLIVCAFCSDYASEMFCGNCNEYKGLMTLGEWLSYTQESWVM
Ga0209599_100009568F015730N/AMLSEKTFNKIVWEYQNGGVVSHHPELTTYERKVLLKYLFSLPSKETK
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