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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000993 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14884 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (25.93%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F001725 | Metagenome / Metatranscriptome | 645 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F042864 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000099323 | F001725 | N/A | MAAISNGTTCIYGVAGTVTNLFVQSYSLSSSFNADVTVVDETGLTKTHRLDDRKSEITIEGIAKTTAMPTLGAALSFTVNTASAYPAGSASASFVGTITKIDDKGSNKGFTAVTITAIDYEGITPA |
| Ga0209599_1000099324 | F001055 | N/A | MGTKSIRHIVESTVATYLSTQTGLTTITFLTGDSAATQTLPKAIVLCESARNPSDLPEGEGNYMCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA |
| Ga0209599_1000099326 | F001298 | N/A | MSLYGDELLNDAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWSQPDGSIGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLLVIDDNQ |
| Ga0209599_100009934 | F000957 | GAGG | MTSFRHLDGMLGLLSELYEINERILTGDILSNKAAINSKRMEKLLKHYHEALSEDGASDIRLEAYAAAGGWVGITYSYTFDGFEVAGSQVPRRA |
| Ga0209599_100009937 | F003714 | N/A | MPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITNTTWVNLNKRGPYRRQK |
| Ga0209599_100009938 | F042864 | N/A | MSTPIKPKAELVFDKAMHELLKRKVVDFRKAASLKDRDGCVKGLGSYALYGVDHTRGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTVLCWHLA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |