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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10001061 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14285 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (93.02%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F002935 | Metagenome | 519 | Y |
| F003379 | Metagenome / Metatranscriptome | 490 | Y |
| F017134 | Metagenome / Metatranscriptome | 242 | Y |
| F017829 | Metagenome / Metatranscriptome | 238 | Y |
| F025737 | Metagenome / Metatranscriptome | 200 | Y |
| F084239 | Metagenome / Metatranscriptome | 112 | N |
| F092053 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_100010611 | F025737 | GGAG | MKPDDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIMEDETYKKKVTIDQMWDNLCEAVSAGQGFS |
| Ga0209599_1000106110 | F001125 | GGCGG | MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWPSETGWGLNVNELGDNEHKVPVIDWSNKTFTLMEADLQTEVFSQSLDAFVAKYSSQPSMV |
| Ga0209599_1000106115 | F002935 | AGG | MSSRTKGYIGTLVDGKKLATIANGIYNLQYSSEFSECTVDNLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDKTEDISDYIRVFGSRLDSNCSLWQSKMSVATATIAQ |
| Ga0209599_1000106118 | F017829 | AGG | MANRYRVEIYDANKLNDVTIYSEQGVDKEHLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQMLSKATRIEFGS |
| Ga0209599_1000106125 | F017134 | GAGG | MELFIVSCLNYEICGAQETFGSESEYEIYGDDYICAECYASEEMEFFETIGWADSDALASAGHGMDEDY |
| Ga0209599_100010613 | F000263 | AGAAGG | MTPEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFSIGVREENKKDGH |
| Ga0209599_100010614 | F092053 | AGG | MKLSSEVKEDLKDQADQIIYFEAAMSNEDKAAKAVYERLVEIYKVAFKEGAKK |
| Ga0209599_1000106143 | F003379 | AGGA | MKKLFGFITLIATAILSGVALNKFLNWAGQQEDFFDFDLNEDIDVEQL |
| Ga0209599_100010615 | F084239 | GGAGG | LTTQTKSSRFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSSNERVYG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |