Scaffold Ga0209599

Basic Information
Taxon OID	3300027710 Open in IMG/M
Scaffold ID	Ga0209599_10001114 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027710 Open in IMG/M

Scaffold ID

Ga0209599_10001114 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13771
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (55.88%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13771

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (55.88%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F039139	Metagenome	164	N
F039635	Metagenome / Metatranscriptome	163	N
F043397	Metagenome	156	N
F054860	Metagenome	139	N
F060908	Metagenome / Metatranscriptome	132	Y
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209599_100011141	F011760	N/A	MENTTTKRMVMRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNSFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSMLDKMFEPYAITPVVESPTFLFEI
Ga0209599_1000111411	F103253	GGA	MEEKVWIYLSKTGTGFELAGTDIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIYGSYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNANS
Ga0209599_1000111414	F039139	N/A	MSMFLNSFEFTTEDITTILRAHDTDISINELVEISDALDFDSIARTALMFDSNEDQLQAALSHAEDLMIMDGLCITEPKRFQMP
Ga0209599_1000111415	F060908	N/A	MTRKLDYTVSKTISTSEKISTQTKNRIHIPKKYASYIGLNKGFVAHITNLNGAYIITAYPTPESKKYMVDKDGAVRFTVEKNEYKIMIADSVVILL
Ga0209599_100011142	F011390	AGGAG	MKIQTTKYGLCTVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANVFNIGSTLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIVDID
Ga0209599_1000111422	F054860	AGAAG	LNITLKNARINYQNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVTQFREWCSIQPPIYDRQSGNTYKYNADIHVNDCLTQYIGNQSKVAVS
Ga0209599_1000111427	F043397	AGGAG	MPRYAVYIPFTYSYGGEPVDEEFDSIVKAENEKDAIQEAITELEGEYVIKTLNSDEITVEEVPEFPSFDEWEETYTALKNPHAYEGEQGLGEIMFDTDGDQYQTVRGFDSEKIWTVRSTEYGLILTAGLGVVDRFGYILSEQPVTEEDKDKAYVID
Ga0209599_1000111429	F039635	AGGA	MTEAQANKIKIKVEVFNELYAPITLRFQMFSTSENNWAVTITYNYTENEWMTFASLDSSYNQINDKLSGFQFGIEAVEAYQEENGNLKFSHSDLPLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209599_10001114

Overview

Ecosystem & Geography

Associated Families

Sequences