NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10001638

Scaffold Ga0209599_10001638


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10001638 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10234
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004306Metagenome / Metatranscriptome444Y
F025742Metagenome / Metatranscriptome200N
F050949Metagenome144N
F088902Metagenome109Y
F092047Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000163819F004306N/AMSLAQRELGETFRKDNNKQMSNKHIEVIRFDNAKISIKEWLGEKSLPPVTYQPAIIKMIGARLLVVNPDNSEEYYDCRYEDCTIKRING
Ga0209599_100016383F050949AGGMLTIKNRGRLISDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKELFSLKRENLYEVGYQLGLLDDNRHINKNMYKIKTYIPIETISDKRLLIKRMTEMIDNSYDI
Ga0209599_100016385F092047GAGMLTIKNFSKIEGSEFQLSSGNKFLIGIARDEGLHYTFGVFPLAVNGVAIIKDVIVYKLHRALLNRRGYGMTSAEMKQDVFVKPANLTLKNFILELHIQTGMICS
Ga0209599_100016388F088902N/AMPIIPTPPPMTLSQRIQAIQQISGNTSNPSIYQQAILDAAEVKRIALEQAQKAIEEYMKVEQEKRKQTILTIENIDKIVGHDYSEWLKVAGVKEWEDHYEFTLLGTGSSNQHETILLHRKQTSDKRYIMEYNNQTLWITKDRLSTIEGIIECMREI
Ga0209599_100016389F025742N/AMLTIVNQDKLTGTVLTTSTPNGTITWHVSGMGGSLHHYIIYLTRDDNGWERKVKLDRIHCPKQTGKQYKLECGNYKMYLYKSTMENINNFKNYLEYFI
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Institute for Fundamental Biomedical Research
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