Basic Information | |
---|---|
Taxon OID | 3300027710 Open in IMG/M |
Scaffold ID | Ga0209599_10001873 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9331 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F047005 | Metagenome | 150 | N |
F093777 | Metagenome / Metatranscriptome | 106 | N |
F095456 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209599_100018734 | F095456 | GGAGG | MDVTLGRFTVTLKKPASFTLAREVTMAVGTSAIRGLGAALGACWGGKSLKAKYGYDALAYGGAVVDELMALGVPEAEIYAAGKVALDLVIESLPREEAVAQAETFTEAQTEG |
Ga0209599_100018736 | F047005 | GGTGG | MAAKSIRQLREDVTARILTLTGWKESRVAPDNFGRDADSIAHKAFAVHPAETADMRAYRGRPAEGLLVETALTVHYCWQLKPKAMSDSYDDALDGEQAVVNVLMAYDASWPLSYKVQVIRTTRTTSDSGEWVLGQVETRIVHTLPLQ |
Ga0209599_100018739 | F093777 | AGGAGG | MAATFTTANASGFEGTPASRPQAMANLLNMPSNAQWWYTHHPAHWQLVEGEWLPDLTQMVAIPGLNRVDKNGDTALTEVHLAKKGATVIPWEVEPGGYCMQFAGVNGPVYLSKWEKPKLVAGQLRVTPDEAGYREFRKRLVVEGWIKVPDPDFIDVIIGRQERLVNEHRTRAPVNPGSALILPVAEKRLEDMRAAKERLYATDEAAPKRGRK |
⦗Top⦘ |