 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10002053 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8750 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (86.96%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F002935 | Metagenome | 519 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F004051 | Metagenome / Metatranscriptome | 455 | Y |
| F013184 | Metagenome / Metatranscriptome | 273 | Y |
| F063705 | Metagenome / Metatranscriptome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000205310 | F013184 | GAGG | LKYYNFVIKLAGSVYARNEEEANEKINLHLDDLGQVESAKFDLNWPDVSWDLEYELC |
| Ga0209599_1000205311 | F002387 | AGGAGG | MASFLEDVNQMVIDAVYQDIAEQLLENWINSNLDEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL |
| Ga0209599_1000205315 | F001043 | AGGAG | MSDYKDGFDDGYKFAREEMMEKLAEIDIADIDTWILDRLCEMIEGGKL |
| Ga0209599_1000205317 | F003422 | N/A | MSTDLVSTKYTFACDPDECDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVNATIAPTTTKEEKMENPTTTTVPDTYNPNLLVTYKVIKGYSDPEYATDKVTSIEWDLHNARQNSKHNAVLLSKIDTVKDIITEAYGDSDDQETLRSIAEALDIALTRTIEWSATIEVSGTMELDLLEDSDTDVESEIYDNLTVDSNHGNIEVIDQEVTNVREN |
| Ga0209599_1000205318 | F002935 | AGG | MRDRTKGYVGNVLDGKKLATIATEIVKAQYNNPSELTVDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLWNGRVFISVEKVKACQTLFKEDISDYIRTFGSRLDSNCSLWQSKMSVAPATILG |
| Ga0209599_1000205323 | F004051 | N/A | KEAKMTINDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLLGA |
| Ga0209599_100020535 | F001019 | AGGA | MSPYEPSLEILEVEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELEYETTR |
| Ga0209599_100020538 | F063705 | GGAGG | LTRSSVFLEYMKLHLISLRQDWEDTLNRMPLKDDEYDPSDAYFEGAIAATEHLLSVATDIMNNSNERVN |
| Ga0209599_100020539 | F001460 | GGAG | MLGYTESDLNKMINAIHDAKLFYLRTPSDLMDKTELRADLEMAVSFMQGLWAEGYFD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |