NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10002847

Scaffold Ga0209599_10002847


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10002847 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6910
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006660Metagenome367Y
F023109Metagenome / Metatranscriptome211Y
F043944Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100028472F023109N/AMIRQATRYDIPRLLEIVEAYAKENTITKLGDSNNHFPKYVEELLFGILQGKGFIYIDNHMRGAIIAIKQNNIWSPKVRELHELLWWVEPEHRNGTLGGRLWKEFDAHAKKMLEIGSVDLIYTSISANGPLIDYTRRGYKPVGATFVRE
Ga0209599_100028474F006660GGAGMSFQTIFEIQQSMTVQNRRTVGQQYSRSGQVRVAQYLTSVPWVFVVEPHSYLYYPQVRNVIQAIDNKDRQLPETISFASNNLSWFVRYQGDLSTLQQAALTLASLPAANSQTITVGNLPSISSSAYIFKAGDFLQLGIYPYKVTADVPRGSGSTVTVSLHRPVIGTPTVGPLSGIGIGCSFFMLAERCPTYTLTPAPNGAFVQWDEPFVFREDITG
Ga0209599_100028476F043944N/AMVFNGHTLDTVAEIDDITMANIQTMYADGLIGNYGLLTQIASLTNGVFNYMRPPNSPTYKLANILGNAYDYIYPPLSEEQKKAAVNDSLIGFMSQAQGFNKTKFGVKNG
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