NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10004142

Scaffold Ga0209599_10004142


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10004142 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5359
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F017484Metagenome / Metatranscriptome240Y
F048982Metagenome / Metatranscriptome147Y
F093237Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000414213F093237GAGMTYKYNLGDTATMSNQELLNALLAKEVAPRTIVGTGYKNGRQVAIDYLKEMIAKENEVK
Ga0209599_1000414220F000808AGAAGGMEYNYSITFSYDGELFSTMRTADLMEAVDVWNKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0209599_100041424F017484GGAGMSNVEIFRLNEQGAGWVSLNDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKDVKGAIYFG
Ga0209599_100041428F048982AGGGGGMISTELQDVLKVVYQIRGNDRHSGAHYLLGYLWANTPEKEKKRIAKLFSDDLAELGNDNE

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