NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10011269

Scaffold Ga0209599_10011269


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10011269 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2720
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100112692F016662GGTGGMTYLVATTEVIYQEADLIKMMLDTGEYGIHGYPISHEAMIEFVKDQEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFARNKHEILDNYPQV
Ga0209599_100112694F030094GAGGMKLRGIFEGSFESVWSMEVPNDVWLSYLEQHPDFDENDRDDIQEMWDYFKSIGCYDEIDDTADTDVYMTGIETYGVEVDVNE
Ga0209599_100112698F007525GGAGMIKSLEGVTVEYTQTIPTAKQMPEFYVWQEGAESYAQVTYLDRVVDIERNGEMHLTLPNLVNGELSDEGATIVRYSDDLEAAGINDDVQLMQFIKTISNSGFEIYRMNPWWEVFAHNDDMGEVYDTFYEAVDAAIDYIMDDRWWD
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