NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209599_10012701

Scaffold Ga0209599_10012701


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10012701 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2518
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y
F017628Metagenome / Metatranscriptome239Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209599_100127011F017628AGGAMATYDIEALKADLPTAKELAQFVYDRTQISLDLIGKTKEDQYQVAKNALEGKKVPADYITNENPYVDRKEQIPVDEVRKLPERSKDLPPEEALVHFFGATNMPHPLDPQSDKKVGINFRKYNNGLLTYQVMGPLEQIAVGTKIN
Ga0209599_100127012F103134GAGGMSGYGKVISGGAQVQKTGGKSINNKLDGFAGENKRRAVVAGAVRQAFTVRHLSDQTTNNVSAGGKFQTPKNPSKV
Ga0209599_100127014F012670GAGGMFDEIRPEGSHVSSEEKKAEARAYAARKRAEKKAMKLATGEKLPSARGFADPANRNNAGRPKSIINKVTEYGATFNKLNEERTSMGLPPLTSAMETLIHAMNSDELDIKEKARIADKLAAFESSRAPIISIEHVQNVNKDEDITAEDAMDEFLDSLRKV
Ga0209599_100127015F001915AGGAGGMEWSLAHPLHDVEDIVEMADSIFGHEADGILTRDRKVFRHRVTVATTEQLFNKGREFIAVCRDSYDSLLGDQLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRTRVKLVNQMIDQHILWAHTWGVPVVCSTSIRADHDGFMKIHKKRGFAVNGSYAWIRTEEAMKCLTK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.