NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1001043

Scaffold Ga0209499_1001043


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1001043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19881
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006467Metagenome / Metatranscriptome372Y
F009524Metagenome / Metatranscriptome316Y
F026545Metagenome197N
F056415Metagenome137Y
F061658Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100104311F056415GGAGGVKVNRKSTPKMVVRPHFVSDYQRLEREARNRERFNFTVAIMALWVLGVLVFQLVNR
Ga0209499_100104314F004668GGAGGMSAADHIEQIHEQGWTRVDTAPMEWVAVVPNDDHTAFGGTLWRIENDGNQYAVGVTAGHPVSAALDYEAAARALAVLIKQENR
Ga0209499_100104315F006467AGGVIKRIIVDLVGGAWTILGLLFAVVVLPEGSTQSTMATLFGGLTLIWLITGPLRWMEE
Ga0209499_100104324F009524AGGAGGVTDLTILDAIADRLASVNPPSGYTLRKVYATPPEGLPVTPAAVLFPGGDQITVGNGNRTTVLTVNCVLFILPIPRMDEKYRDLYTWRAWLRTAFDGAVTISGNAVQVAVTGTTLGTDTYADQDYLTVQATAEVTVYDTVAFTA
Ga0209499_100104325F061658GGAGGMAVITEPAYLDEETGMLTEIVRDAETGEIIGKNERMPEEATE
Ga0209499_10010433F026545GGAGGMAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRIVFPGQRVLVIHEKGRRFEWRHKACVK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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