NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1001646

Scaffold Ga0209499_1001646


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1001646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15148
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038244Metagenome166Y
F095129Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209499_100164620F095129GGALNIQGLTLNPETKQVALHLAEKTFERYRNNPGHYRNTLSSHLVGHLGEFAAFIWLRDNGFEPEAAFSDPSKDKEADISTNVGRIEVKTWSERYWEQWGRCVSVSQYASIKRKADFIFWLSVDEVDSDIPKVAFRGWCEVDIFEGMSPIMTGDPGREVRNYQLHPSQLKPVEEMEKLHESRRDS
Ga0209499_100164624F038244AGGAGMAISSAQVTVTTAATLLVAADMQAEQVNFHSSSGTIYLGDANVTSSTGYRMDNGDKVVLQNHETPIYGITSTGSATMSVLVITK
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Institute for Fundamental Biomedical Research
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