NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1027792

Scaffold Ga0209499_1027792


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1027792 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2528
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F057320Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_10277921F057320AGGAMSYVGLYDDAGSKNAFYIIRDKKIGRKRVGFKEFSDKKEAEFAHRVQKHLAQFDLAPMVYGDVGFIRRNDGQLTYYGYLTEVARPMPTCHDDDCDGECFQSECNNGTTIDEVVYGLNEHGLDYNDAHSGNFGYVRRNGKWVAVVIDLGIESFTEWD
Ga0209499_10277922F000325AGGAGMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRSMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRQALPKLVVINATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209499_10277925F006543GGAGMKKFSFAVDIVGDEIDSADVVATLTKALNDELPGDVHANVKPAGIKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVETETETVA
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