NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209499_1098508

Scaffold Ga0209499_1098508


Overview

Basic Information
Taxon OID3300027712 Open in IMG/M
Scaffold IDGa0209499_1098508 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F040590Metagenome161Y
F099270Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209499_10985081F001059AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDFVGKPKEDQYQVAKNALEGKKIPSDYMTELNPYLDKKELIPEDAIKQMPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYENGAITYQITGPLEKTAIGERINKFGQKQPEKYSWLDPRTPEIMMRRADGTYTEKGRGLYAYCIGEKGGGIWPLIDR
Ga0209499_10985082F040590N/AMSGYGKIISGGARMTKGLTKGINDKLEEYAESHKMSATLANSVRKAFNQNPLSDPHLNNINVKATPKFTTPKLPAKIXKV
Ga0209499_10985083F099270N/AQKMNTNFQYAQAPNRKGNVSKHTPSHSGGVTAVTGPKHGVATPKGSQGAPAANGNITGRHQKVQVSTHADYCGTIKNDGYMDKSTKNYLG
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