NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209815_1000198

Scaffold Ga0209815_1000198


Overview

Basic Information
Taxon OID3300027714 Open in IMG/M
Scaffold IDGa0209815_1000198 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46028
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (13.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002698Metagenome / Metatranscriptome536Y
F012164Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0209815_100019836F002698N/AMKLFHSYRYNIQISLSKQITIMKLKIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIHSTVYLPQRDAVKHHSIAADKIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFDHDAIKGELEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSQEQRDAIFARSDSKFDFKLDTHSIGKVKNLFSLDKDETFGILSDVQGINVNGKSFNVVLTPDTNGTGLVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSETLLTISTCQTA
Ga0209815_100019851F012164N/AMSTELKSLKGQFHSQKTNEMENTELSLTRFSGGKEGMKVQLTMRDQGDFFTHITLNKEQIKVLISELQENFDLK
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