Scaffold Ga0209815_1008690

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209815_1008690

Scaffold Ga0209815_1008690

Overview

Basic Information
Taxon OID	3300027714 Open in IMG/M
Scaffold ID	Ga0209815_1008690 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4934
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023219	Metagenome	211	Y
F065136	Metagenome	128	Y
F087779	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209815_100869012	F087779	N/A	MNKRHLIISQGAPTLDDGQCCVRVIEEQEVGPRTVHFNGRVNYGLPITNIMEEWDCYELRYTAGAREKFLGKALDPDLLT
Ga0209815_10086905	F023219	GGA	MVPHNKKETMLNNITNIVRSNQNAVMVRVGSTSQAVYTIFDLKSSSNSYTGSLAGAKSAWNRKYKNSRQFVAKGNHRFLTA
Ga0209815_10086907	F065136	AGG	MKNTIRITKQGGMQYTFDNGYTLSIGCGIAHYSSNQDKDDAFGECTEVEVAVRNPAGGFVALEFDVAGWVKASVIPSLMRAVENKDWEHVALLCGQDEYDHGKNRRDLDASSTHSQPCGYYDDEDPYA

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