NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209815_1036058

Scaffold Ga0209815_1036058


Overview

Basic Information
Taxon OID3300027714 Open in IMG/M
Scaffold IDGa0209815_1036058 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1891
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008386Metagenome334Y
F013576Metagenome270Y
F020447Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0209815_10360584F008386N/AMSSDKQLILIILVAVVVFGYQWIKDEKKKNDEKLQKHLSKYFDSKW
Ga0209815_10360587F013576N/AMICSHNGVKIMFDDIKKEIDDTLNHLNPFENICSDGYAGNNILPSHVKKFIADKKATQKEQEMIDNWKDEIAMNKGGK
Ga0209815_10360588F020447N/AMIKQIMMVLILTAIVLFLGFLGIEYLIAQLINDMFAQWS

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