Scaffold Ga0208665_10082851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208665_10082851

Scaffold Ga0208665_10082851

Overview

Basic Information
Taxon OID	3300027715 Open in IMG/M
Scaffold ID	Ga0208665_10082851 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	973
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3769	Long. (^o)	-82.5172	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001844	Metagenome / Metatranscriptome	627	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208665_100828511	F001844	N/A	VVASFPGARKDISPAQAEALLRIDARLEPVLAELTRQYTQKYQKSTAIETRLWHAVFDLIKAFLVAYNASLKAGYARAENRRWRAVLPWVLVRLAHYKGLDGKFRLFRYGQWIPAQWRELHELYEFARMRGWQREQLVFGAGTFSRPGVCVEQEYLKTLLLMRLDSGNFTPDQVEWVAKHMDDWVPSLSLVPPPGEGSGFYVDLTGTQGLRRREKRALAGRVQMLDTGPAYTRIVEQLRWLPEHDDAVPKPGDLPAREQRLLLMRLASLFGPDAIAHAPRAERVPVDGEVRVVVGLPALTRAVAEADRLPEAARTPGVTSSID

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