NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10000494

Scaffold Ga0209617_10000494


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10000494 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17247
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F027413Metagenome / Metatranscriptome194N
F029049Metagenome / Metatranscriptome189Y
F068843Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_1000049412F002269AGGAGMKEQAKAAAVSYMRAALSCVGALYLSGITDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK
Ga0209617_1000049413F015095AGGVERAQLLIGIALGVTTILGLGAGLIRHLVKFYLSELKHDNNGGHNLAGRVERIEARVDRIYEILLEDRLAK
Ga0209617_1000049415F007029AGGAGMGFLDNYEDVNARIKRFRAEFPSGRLVAYIESFDIEKGTILVRAEAYREYEDTLPSAIDYAFGNVATYPQNMRKWMVEDTITSSYGRCIGLLTPSLEHSSRPTVQDMQKVETLPTSSDPWSTKASIEDMATMATAVLDISTQLGGELVAETPRCSHGTMVWAEGTAKATGKPWAAYKCTERIRANQCNPVWQVMTSTGWKPQV
Ga0209617_1000049417F029049GAGGVAVCRVSSVAKVILDRSQEITAHRVGLERTIIRNADPTDASNYGQKYNNWHELVWQESESVGAEIAVALYYGDFAFKPAIDNGHDTADVGENIEVKWTKHANGHLILQNRGPGRPNDVAILVTGFSPCYILLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
Ga0209617_100004943F068843GGAGMSLTDEDIAFLIKIGQITEAPKKETKIKDTPTDKNEE
Ga0209617_100004948F027413AGGVSTWLPEWRITVGTTVYDNVLTVNMATGRDDIDLQCNAGYARMEIVNTNNSAFDIDVTDALTLELKDSGGTYVPVFGGTVSDFGISVRSPEELGFITIGNILAVGSLAKLTKALFPDALAKDTDGDQIFDILNELLINSWFEVAPALQWYNYDPTTTWANAENVGLGEIDTPGLYEMIARSADPFSSYNLCAQIAQSALGQIYEDKAGRVCYADTDHRTQYLSVNGYTTISANYATPSSVKSILQIGKIRNSLVFNYGNNYANQATDSDPDSIANYGRYQRSVSSNLHNLADVNTLMTRELGLRAIPRSQLQALTFRLDSPALPDAERNKLIDIFFGEPVVINDLPINMFNGSFNGFVEGFAIRATPNYVDITLTLSPTDFSLVAPQWDTVSPANLIWTGVNATLIWENAFGGLT
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